TradeSeq Example SCE for BLASE Vignette

Data from the TradeSeq vignette, with the following additional processing applied:

Usage

tradeSeq_BLASE_example_sce

Format

An object of class SingleCellExperiment with 240 rows and 1565 columns.

Source

https://bioconductor.org/packages/devel/bioc/vignettes/tradeSeq/inst/doc/tradeSeq.html

Details

1. Pseudotime calculated

2. TradeSeq applied

3. Log normalised and normalised counts calculated

4. Erythrocyte cell type removed

5. UMAP calculated