Malaria Cell Atlas Plasmodium falciparum for BLASE Vignette

Data from the Malaria Cell Atlas, with the following additional processing:

1. Genes renamed to match bulk samples in vignette

2. Subset to 2500 cells

3. Normalised

4. Highly variable genes identified

5. Pseudotime calculated

6. Genes subset to include a spread of those found to have high ratios by BLASE's "Gene Peakedness" measure.

Usage

MCA_PF_SCE

Format

An object of class SingleCellExperiment with 1746 rows and 2500 columns.

Source

https://www.malariacellatlas.org/atlas/plasmodium-falciparum-atlas/